Plot line graph showing parameter value vs dimension from algorithm output.

Usage

plot_time_series(
  output,
  parameters,
  target = NULL,
  external_target = NULL,
  use_initial_points = TRUE,
  use_weights = TRUE,
  mcmc = FALSE,
  max_line_width = 1,
  alpha = 0.1,
  xlimits = NULL,
  ylimits = NULL
)

Arguments

output: Output from the SMC or EnK algorithm.
parameters: The parameters we wish to be on the y-axis of the line graph.
target: (optional) The target to plot. (default is to use all targets)
external_target: (optional) The external target to plot. (default is to use all external targets, or to ignore if the column is not present)
use_initial_points: (optional) If target is not specified and this argument is TRUE, will add the initial unweighted proposed points to the output to be plotted. (default is TRUE)
use_weights: (optional) If FALSE, will ignore particle weights in the line graph. If TRUE, will use the particle weights. (defaults to TRUE)
mcmc: (optional) If TRUE, the user is indicating that the output is from an MCMC algorithm. This will set use_initial_points=FALSE and use_weights=FALSE no matter what the user sets these arguments to. (default is FALSE)
max_line_width: (optional) The maximum size of the points in the plot. (default=1)
alpha: (optional) The transparency of the lines in the plot. (default=0.1)
xlimits: (optional) Input of the form c(start,end), which specifies the ends of the x-axis.
ylimits: (optional) Input of the form c(start,end), which specifies the ends of the y-axis.

Value

A line graph in a ggplot figure.