An animated density of a single variable across targets.
Usage
animate_density(
output,
parameter,
dimension = 1,
target = NULL,
external_target = NULL,
use_initial_points = TRUE,
use_weights = TRUE,
mcmc = FALSE,
xlimits = NULL,
ylimits = NULL,
default_title = FALSE,
duration = NULL,
animate_plot = TRUE,
save_filename = NULL,
save_path = NULL
)Arguments
- output
Output from the SMC or EnK algorithm.
- parameter
The parameter for which we wish to view the density.
- dimension
(optional) The dimension of the parameter for which we wish to view the density. (default is 1)
- target
(optiona) If specified, will fix to this target, and animate over ExternalTarget (if present in output).
- external_target
(optional) If specified, will fix to this external_target, and animate over Target.
- use_initial_points
(optional) If target is not specified and this argument is TRUE, will add the initial unweighted proposed points to the output to be plotted. (default is TRUE)
- use_weights
(optional) If FALSE, will ignore particle weights in the density. If TRUE, will use the particle weights. (defaults to TRUE)
- mcmc
(optional) If TRUE, the user is indicating that the output is from an MCMC algorithm. This will set use_initial_points=FALSE and use_weights=FALSE no matter what the user sets these arguments to. (default is FALSE)
- xlimits
(optional) Input of the form c(start,end), which specifies the ends of the x-axis.
- ylimits
(optional) Input of the form c(start,end), which specifies the ends of the y-axis.
- default_title
(optional) If TRUE, will provide a default title for the figure. If FALSE, no title is used. (defaults to FALSE)
- duration
(optional) The duration of the animation. (defaults to producing an animation that uses 10 frames per second)
- animate_plot
(optional) If TRUE, will return an animation. If FALSE, returns a gganim object that can be further modified before animating. (defaults to FALSE)
- save_filename
(optional) If specified, the animation will be saved to a gif with this filename. (default is not to save)
- save_path
(optional) If specified along with save_filename, will save the gif to save_path/save_filename. (defaults to working directory)